| 4.3.20172017-3-4 17:00:00 | 17:00 | Premier League | 18. R | Tom Tomsk - FC Rostov | -:- |
| 5.12.20162016-12-5 11:00:00 | 11:00 | Premier League | 17. R | FC Ufa - Tom Tomsk | -:- |
| 1.12.20162016-12-1 17:30:00 | 17:30 | Premier League | 16. R | Tom Tomsk - Lokomotive Moskau | 1:6 (0:0) |
| 27.11.20162016-11-27 12:00:00 | 12:00 | Premier League | 15. R | Krylya Sovetov Samara - Tom Tomsk | 3:0 (1:0) |
| 21.11.20162016-11-21 17:00:00 | 17:00 | Premier League | 14. R | Terek Grosny - Tom Tomsk | 0:0 (0:0) |
| 5.11.20162016-11-5 9:00:00 | 9:00 | Premier League | 13. R | Tom Tomsk - Spartak Moskau | 0:1 (0:1) |
| 30.10.20162016-10-30 15:00:00 | 15:00 | Premier League | 12. R | Zenit St. Petersburg - Tom Tomsk | 1:0 (1:0) |
| 22.10.20162016-10-22 11:05:00 | 11:05 | Premier League | 11. R | Tom Tomsk - Anschi Machatschkala | 0:3 (0:0) |
| 24.8.20162016-8-24 18:00:00 | 18:00 | Cup | 4. R | Energomash Belgorod - Kuban Krasnodar | 3:0 (1:0) |
| 21.5.20162016-5-21 12:30:00 | 12:30 | Premier League | 30. R | Ural - Kuban Krasnodar | 2:0 (1:0) |
| 16.5.20162016-5-16 18:30:00 | 18:30 | Premier League | 29. R | Kuban Krasnodar - Dinamo Moskau | 1:0 (1:0) |
| 11.5.20162016-5-11 18:30:00 | 18:30 | Premier League | 28. R | Lokomotive Moskau - Kuban Krasnodar | 0:1 (0:0) |
| 7.5.20162016-5-7 16:00:00 | 16:00 | Premier League | 27. R | Kuban Krasnodar - Mordovya | 1:2 (1:1) |
| 28.4.20162016-4-28 18:30:00 | 18:30 | Premier League | 26. R | Zenit St. Petersburg - Kuban Krasnodar | 4:1 (2:1) |