| 13.12.20162016-12-13 20:45:00 | 20:45 | FA Cup | 2. R | Milton Keynes Dons - Charlton Athletic | -:- |
| 3.12.20162016-12-3 16:00:00 | 16:00 | FA Cup | 2. R | Charlton Athletic - Milton Keynes Dons | 0:0 (0:0) |
| 8.11.20162016-11-8 20:45:00 | 20:45 | EFL Trophy Southern Group E | 3. R | Colchester United - Charlton Athletic | 5:4 (1:1) |
| 5.11.20162016-11-5 16:00:00 | 16:00 | FA Cup | 1. R | Charlton Athletic - Scunthorpe United | 3:1 (2:0) |
| 4.10.20162016-10-4 20:45:00 | 20:45 | EFL Trophy Southern Group E | 2. R | Charlton Athletic - Crawley Town | 0:2 (0:1) |
| 30.8.20162016-8-30 20:45:00 | 20:45 | EFL Trophy Southern Group E | 1. R | Charlton Athletic - Southampton Academy | 5:4 (0:0) |
| 9.8.20162016-8-9 20:45:00 | 20:45 | EFL Cup | 1. R | Cheltenham Town - Charlton Athletic | 1:0 (1:0) |
| 4.12.20162016-12-4 15:00:00 | 15:00 | FA Cup | 2. R | Bolton Wanderers - Sheffield United | 3:2 (1:0) |
| 8.11.20162016-11-8 20:45:00 | 20:45 | EFL Trophy Northern Group A | 3. R | Cheltenham Town - Bolton Wanderers | 1:0 (0:0) |
| 5.11.20162016-11-5 16:00:00 | 16:00 | FA Cup | 1. R | Bolton Wanderers - Grimsby Town | 1:0 (1:0) |
| 4.10.20162016-10-4 20:00:00 | 20:00 | EFL Trophy Northern Group A | 2. R | Bolton Wanderers - Blackpool | 1:0 (1:0) |
| 30.8.20162016-8-30 20:00:00 | 20:00 | EFL Trophy Northern Group A | 1. R | Bolton Wanderers - Everton Academy | 0:2 (0:1) |
| 9.8.20162016-8-9 20:45:00 | 20:45 | EFL Cup | 1. R | Blackpool - Bolton Wanderers | 4:2 (0:1) |