| 1.11.20162016-11-1 20:45:00 | 20:45 | FA Trophy Qualification | 2. R | Harrow Borough - Herne Bay | 3:0 (1:0) |
| 29.10.20162016-10-29 16:00:00 | 16:00 | FA Trophy Qualification | 2. R | Herne Bay - Harrow Borough | 2:2 (1:1) |
| 8.10.20162016-10-8 16:00:00 | 16:00 | FA Trophy Qualification | 1. R | Barton Rovers - Herne Bay | 0:1 |
| 20.9.20162016-9-20 20:45:00 | 20:45 | FA Cup Qualification | 2. R | Herne Bay - Hemel Hempstead | 1:5 |
| 17.9.20162016-9-17 16:00:00 | 16:00 | FA Cup Qualification | 2. R | Hemel Hempstead - Herne Bay | 1:1 |
| 3.9.20162016-9-3 16:00:00 | 16:00 | FA Cup Qualification | 1. R | Herne Bay - Ashford Town | 3:1 |
| 15.11.20162016-11-15 20:45:00 | 20:45 | FA Trophy Qualification | 3. R | Merstham - Hythe Town | 0:3 (0:0) |
| 5.11.20162016-11-5 13:35:00 | 13:35 | FA Cup | 1. R | Merstham - Oxford United | 0:5 (0:2) |
| 29.10.20162016-10-29 16:00:00 | 16:00 | FA Trophy Qualification | 2. R | Waltham Abbey - Merstham | 0:5 (0:4) |
| 15.10.20162016-10-15 16:00:00 | 16:00 | FA Cup Qualification | 4. R | Merstham - Ebbsfleet United | 2:1 |
| 1.10.20162016-10-1 16:00:00 | 16:00 | FA Cup Qualification | 3. R | Merstham - Thamesmead Town | 5:1 |
| 21.9.20162016-9-21 20:30:00 | 20:30 | FA Cup Qualification | 2. R | Colliers Wood United - Merstham | 1:2 |