| 25.8.20162016-8-25 20:00:00 | 20:00 | Europa League Qualification | Finale |
KF Shkendija - Gent
| 0:4 (0:0) |
| 18.8.20162016-8-18 20:30:00 | 20:30 | Europa League Qualification | Finale |
Gent - KF Shkendija
| 2:1 (1:1) | Ghelamco ArenaOttergemsesteenweg-Zuid 808Gent,9000BE |
| 4.8.20162016-8-4 19:00:00 | 19:00 | Europa League Qualification | 3. R |
Mlada Boleslav - KF Shkendija
| 1:0 (0:0) | Mestsky stadion Mlada Boleslav U Stadionu 1118/II Mladá Boleslav,293 01 CZ |
| 28.7.20162016-7-28 19:55:00 | 19:55 | Europa League Qualification | 3. R |
KF Shkendija - Mlada Boleslav
| 2:0 (0:0) |
| 21.7.20162016-7-21 20:00:00 | 20:00 | Europa League Qualification | 2. R |
KF Shkendija - FK Neftchi
| 1:0 (1:0) |
| 14.7.20162016-7-14 17:55:00 | 17:55 | Europa League Qualification | 2. R |
FK Neftchi - KF Shkendija
| 0:0 (0:0) |
