| 8.11.20162016-11-8 20:45:00 | 20:45 | EFL Trophy Southern Group E | 3. R |
Colchester United - Charlton Athletic
| 5:4 (1:1) | Weston Homes Community StadiumUnited WayColchester,CO4 5UPGB |
| 5.11.20162016-11-5 16:00:00 | 16:00 | FA Cup | 1. R |
Colchester United - Chesterfield
| 1:2 (0:1) | Weston Homes Community StadiumUnited WayColchester,CO4 5UPGB |
| 4.10.20162016-10-4 20:45:00 | 20:45 | EFL Trophy Southern Group E | 2. R |
Colchester United - Southampton Academy
| 1:2 (1:1) | Weston Homes Community StadiumUnited WayColchester,CO4 5UPGB |
| 30.8.20162016-8-30 20:45:00 | 20:45 | EFL Trophy Southern Group E | 1. R |
Crawley Town - Colchester United
| 1:0 (1:0) | Broadfield StadiumWinfield WayWest Sussex,RH11 9RXGB |
| 9.8.20162016-8-9 20:45:00 | 20:45 | EFL Cup | 1. R |
Brighton & Hove Albion - Colchester United
| 4:0 (0:0) | The American Express Community StadiumVillage WayBrighton,BN1 9BLGB |
| 30.1.20162016-1-30 13:45:00 | 13:45 | FA Cup | 4. R |
Colchester United - Tottenham Hotspur
| 1:4 (0:1) | Weston Homes Community StadiumUnited WayColchester,CO4 5UPGB |
