| 6.12.20162016-12-6 20:45:00 | 20:45 | Champions League grp. D | 6. R | Bayern München - Atletico Madrid | -:- |
| 2.12.20162016-12-2 20:30:00 | 20:30 | 1. Bundesliga | 13. R | Mainz 05 - Bayern München | 1:3 (1:2) |
| 26.11.20162016-11-26 18:30:00 | 18:30 | 1. Bundesliga | 12. R | Bayern München - Bayer Leverkusen | 2:1 (1:1) |
| 23.11.20162016-11-23 18:00:00 | 18:00 | Champions League grp. D | 5. R | FC Rostov - Bayern München | 3:2 (1:1) |
| 19.11.20162016-11-19 18:30:00 | 18:30 | 1. Bundesliga | 11. R | Borussia Dortmund - Bayern München | 1:0 (1:0) |
| 5.11.20162016-11-5 15:30:00 | 15:30 | 1. Bundesliga | 10. R | Bayern München - Hoffenheim | 1:1 (1:1) |
| 1.11.20162016-11-1 20:45:00 | 20:45 | Champions League grp. D | 4. R | PSV Eindhoven - Bayern München | 1:2 (1:1) |
| 4.12.20162016-12-4 15:00:00 | 15:00 | FA Cup | 2. R | Bolton Wanderers - Sheffield United | 3:2 (1:0) |
| 8.11.20162016-11-8 20:45:00 | 20:45 | EFL Trophy Northern Group A | 3. R | Cheltenham Town - Bolton Wanderers | 1:0 (0:0) |
| 5.11.20162016-11-5 16:00:00 | 16:00 | FA Cup | 1. R | Bolton Wanderers - Grimsby Town | 1:0 (1:0) |
| 4.10.20162016-10-4 20:00:00 | 20:00 | EFL Trophy Northern Group A | 2. R | Bolton Wanderers - Blackpool | 1:0 (1:0) |
| 30.8.20162016-8-30 20:00:00 | 20:00 | EFL Trophy Northern Group A | 1. R | Bolton Wanderers - Everton Academy | 0:2 (0:1) |
| 9.8.20162016-8-9 20:45:00 | 20:45 | EFL Cup | 1. R | Blackpool - Bolton Wanderers | 4:2 (0:1) |